HsaALTA0008448-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161179614-161203595:+
Coord C1 exon
chr2:161179614-161179761
Coord A exon
chr2:161203484-161203486
Coord C2 exon
chr2:161203487-161203595
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
CTAACTGGTTTTTATGTCAGCAG
3' ss Score
2.67
Exon sequences
Seq C1 exon
ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG
Seq A exon
CAG
Seq C2 exon
ACTGAGAACTATGAGCAGAGAATACGTGAACAACAGGAACAGCTGTCACTTCAACAGACTATTATTGACAAGCTAAAATCTCAGTTACTTCTTGTGAATTCCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-33-29,33-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=NA C2=0.282
Domain overlap (PFAM):
C1:
PF040127=PspA_IM30=PU(46.3=93.9),PF125063=DUF3713=PU(39.5=90.9),PF041569=IncA=PU(39.2=87.9)
A:
NA
C2:
PF040127=PspA_IM30=PD(49.2=86.5),PF041569=IncA=FE(36.4=100),PF125063=DUF3713=FE(42.4=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCGTATGAAGCCTTCCGG
R:
TCCTGTTGTTCACGTATTCTCTGC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development