HsaEX0063573 @ hg38
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161159787-161179761:+
Coord C1 exon
chr2:161159787-161160484
Coord A exon
chr2:161161285-161161412
Coord C2 exon
chr2:161179614-161179761
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTGTTTATCTCACCTCACAGGAG
3' ss Score
9.66
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
TGCAGGTTCCTGGGCTTCACTCCAGTTGCTCTGAAATGAAAGCTGTAGGAGTCGGTTGGTGAAACTACATTTTGTTTCTCAGGTGATTCTTGTGTACTCTAACTCATATATAGGGTGATGTTATTTATTTACTGGTTATTTATTTACCGGTTATTTATCGTTTGGCAAAAAAATCCAGCAAAGACTCACAAGTGACCTTTACACTTGACATAGGATTCTCTTCCGCTGCTGACGCTTTTTTTTTCTAAGAGGCGGGGACTTGGCTGGGCAGGGCTGGGGGAGGGCGCTAGGCGGGGCGGGCAGGGGCGGGGCAGAAGAGCCCTGGGCTGGGTGGGGCAGGGCGGAAGGGCCCTGGCCTTGTTGGGTGGAGGTGAAGAGTTAATGGCTCCGCGCGCAGGCACTGCCCTCTGAACTGGAACAAAATGCAACTTCCGGTTGGAGTCACTCGGCCAGGCGCCGGCGACCTGAGGGGAGAGGGAACGCAGCTGAAAGCGTGAACT
Seq A exon
GAGATGCTTTTGACAAGTTATAATAAGGGAGAGATGGTAGTAAAGGAAGTGAAGAAGCGACGTGAAATTGAAGGAAAAGAAAATGACCTGCCTTCTTACCGCGGTTGGAATACACACCCAAACGAGAG
Seq C2 exon
ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560_MULTIEX1-2/5=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.417 C2=0.282
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF040127=PspA_IM30=PU(46.3=93.9),PF125063=DUF3713=PU(39.5=90.9),PF041569=IncA=PU(39.2=87.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTTGGGTGGAGGTGAAG
R:
CGGAAGGCTTCATACGCTTTA
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development