HsaEX1039968 @ hg38
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161159787-161179761:+
Coord C1 exon
chr2:161159787-161160484
Coord A exon
chr2:161177112-161177184
Coord C2 exon
chr2:161179614-161179761
Length
73 bp
Sequences
Splice sites
3' ss Seq
AACTGCTTATGTTTCCATAGTGT
3' ss Score
7.39
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
TGCAGGTTCCTGGGCTTCACTCCAGTTGCTCTGAAATGAAAGCTGTAGGAGTCGGTTGGTGAAACTACATTTTGTTTCTCAGGTGATTCTTGTGTACTCTAACTCATATATAGGGTGATGTTATTTATTTACTGGTTATTTATTTACCGGTTATTTATCGTTTGGCAAAAAAATCCAGCAAAGACTCACAAGTGACCTTTACACTTGACATAGGATTCTCTTCCGCTGCTGACGCTTTTTTTTTCTAAGAGGCGGGGACTTGGCTGGGCAGGGCTGGGGGAGGGCGCTAGGCGGGGCGGGCAGGGGCGGGGCAGAAGAGCCCTGGGCTGGGTGGGGCAGGGCGGAAGGGCCCTGGCCTTGTTGGGTGGAGGTGAAGAGTTAATGGCTCCGCGCGCAGGCACTGCCCTCTGAACTGGAACAAAATGCAACTTCCGGTTGGAGTCACTCGGCCAGGCGCCGGCGACCTGAGGGGAGAGGGAACGCAGCTGAAAGCGTGAACT
Seq A exon
TGTCTATGTCTGGGCCAAGATCCTAGCAACATTAATTATCGTAACAGGATTTCAACTTTTTCATCTATCAGAG
Seq C2 exon
ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560_MULTIEX1-5/5=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.282
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF040127=PspA_IM30=PU(46.3=93.9),PF125063=DUF3713=PU(39.5=90.9),PF041569=IncA=PU(39.2=87.9)
Main Inclusion Isoform:
ENST00000402568fB27549
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGTTAATGGCTCCGCG
R:
TCCTCTTCGTCCTGTAGCATCA
Band lengths:
178-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains