HsaALTD1021530-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161161285-161179761:+
Coord C1 exon
chr2:161161285-161161412
Coord A exon
chr2:161161413-161161568
Coord C2 exon
chr2:161179614-161179761
Length
156 bp
Sequences
Splice sites
5' ss Seq
CCTGTATGT
5' ss Score
4.27
3' ss Seq
TTGATCTCATTATTTTGCAGACC
3' ss Score
10.35
Exon sequences
Seq C1 exon
GAGATGCTTTTGACAAGTTATAATAAGGGAGAGATGGTAGTAAAGGAAGTGAAGAAGCGACGTGAAATTGAAGGAAAAGAAAATGACCTGCCTTCTTACCGCGGTTGGAATACACACCCAAACGAGAG
Seq A exon
GTAGCAGAGAAGCAAGCAGTGCATTCTGTTAAAAATTATTGTGTCCTCATTTGAGAGAGGAGGGATCCTCAAATAATACAACTATGTGCAAAGCAGGAAGTGAAATCCTTCTCAGTCCTCTCCCCAGTTGTAATCCAAGCCTTCCACATCTTTCCT
Seq C2 exon
ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-11-23,13-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF040127=PspA_IM30=PU(46.3=93.9),PF125063=DUF3713=PU(39.5=90.9),PF041569=IncA=PU(39.2=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTTATAATAAGGGAGAGATGGT
R:
GCAGAATCTCTATCCATGCATGC
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains