MmuEX0041876 @ mm9
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:28980512-28982583:+
Coord C1 exon
chr2:28980512-28981069
Coord A exon
chr2:28981372-28981483
Coord C2 exon
chr2:28982394-28982583
Length
112 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTATTTTAATTTCAGAAA
3' ss Score
6.63
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CCCCATGGTCCGCCCCCTTGGTGTACCACAACAAGCCGGCTCTGGCGGGGGCGGGCTGAGGGCGGGGTCCGCTCTCGCGGCAGCGGCGGGTTGGGCGTTGGGCGTCGCCTTGCCCTTCCGTCTGCTGTTCTAGCGGGGGGCATGGAGGTGGGTTAGCGCGCTGCAGCCGGGCCTAGCCGGGGTGAGACGCGCCGCGGACAAGCCGCGAGCGGGCGAACGAGCAGGAGAGGAGAGCGCGTGCGCGGTGAGGGGCGCGCGGCTTACTGCCGTTGGGAACTTGCGCGCGGCCTGCGGGAGCGGGCGCCTGCTGTGACCCTTCTGGAGAGCTGCGTTTGGTGAGAGCGGCGGCTTGCCGCTGCTACCAAGGGCGGGCAGCGCTTGGTGTTTCCTGCAAGCGAGGCCCGCCCCCGGATCTCTGCTGTTCTGGCATCAGCACCGCCGGCCCTGGGCAACGATGTACAGCGAGGACCCTTAGCTTCGGGGCGAGGGAGGCCTCCCGG
Seq A exon
AAATGTTCTTTTTGGGGGCCAAAGTGTGAATCTGTCTGAATGCAGAGCCACATCTCACAGATAAGCCCAGCAATCACAAAGAGCATCACTTCTCTGTAGGACCTTGGTCAAG
Seq C2 exon
CTACAGGTGCAGCATGAGCACATGCTGTTGGTGTACTCCAGGTGGGTCTTCCACCATTGATGTCCTAAAGCGCTATGCATCTAGCACTGGGTCAAGTGAATTTCAGACAGCTGATGAAGACCTCTGCTACTGCTTAGAGTGTGTGGCTGAGTACCACCGAGCCAGAGATGAGGTGCCGTTCTTGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535-'5-5,'5-2,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACCCTTCTGGAGAGCT
R:
AAGACCCACCTGGAGTACACC
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: