Special

ENSG00000107290 @ hg38

Biotype
protein_coding
Gene Symbol
SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132261356-132354985:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
40
chr9:132354917-132354956
-
83.33
48.48
0
Alternative 5'ss
306
chr9:132354651-132354956
-
12.14
39.29
0
Exon Skipping
116
chr9:132288236-132288351
-
99.37
39.86
0
Exon Skipping
231
chr9:132282627-132282857
-
2.22
26.6
0
Exon Skipping
87
chr9:132269403-132269489
-
95.47
12.12
0
Exon Skipping
303
chr9:132274556-132274858
-
1.67
25.79
0
Exon Skipping
4176
chr9:132326324-132330499
-
99.26
14.52
1
Intron Retention
4213
chr9:132349436-132353648
-
8.45
33.33
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000043535 Setx 1-to-1
Mouse mm9 ENSMUSG00000043535 Setx 1-to-1
Rat rn6 ENSRNOG00000013491 Setx 1-to-1
Cow bosTau6 ENSBTAG00000024822 SETX 2-to-1
Chicken galGal4 ENSGALG00000003661 SETX 1-to-1
Chicken galGal3 ENSGALG00000003661 SETX 1-to-1
Zebrafish danRer10 ENSDARG00000022996 setx 1-to-1