HsaEX0057545 @ hg38
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132266127-132269702:-
Coord C1 exon
chr9:132269615-132269702
Coord A exon
chr9:132269403-132269489
Coord C2 exon
chr9:132266127-132266249
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATGGTTGTTATGTTTTCCAGCAA
3' ss Score
6.21
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
ATTCCTGGCAAGTTTGCAGAGATTGAATGTCACCATCACACGAGCCAAGTACAGCCTCTTCATCCTCGGACATTTGAGGACCCTGATG
Seq A exon
CAACTTCTTCCTAGGAGCTTTTGTGTACACGTGAACCATTCGCCTTTTTTCAGCCCAGAACCCAAGTATCTACACTGGGCTCTCAAG
Seq C2 exon
ATGAGGAAACAGGCTCAGAGAGGTCAAGTGACTTGACCAAGGTCACACAGCAAGTAAATACTGTGCAGCCTCACTGCTTCCCTAACATACCTTTATGAACAGTACAGGAGCCCCCATGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF130871=AAA_12=PD(12.9=86.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000436441fB31576
Main Skipping Isoform:
ENST00000224140fB6255
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCACCATCACACGAGCC
R:
GGGGGCTCCTGTACTGTTCAT
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development