Special

ENSMUSG00000043535 @ mm10

Biotype
protein_coding
Gene Symbol
Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29124181-29182471:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
110
chr2:29133922-29134031
+
97.29
98.51
0
Exon Skipping
90
chr2:29162734-29162823
+
1.57
25.93
0
Exon Skipping
112
chr2:29125852-29125963
+
94.77
25
0
Exon Skipping
211
chr2:29130180-29130390
+
98.47
51.91
0
Exon Skipping
159
chr2:29153938-29154096
+
98.71
30.71
0
Exon Skipping
165
chr2:29174319-29174483
+
9.52
80.64
0
Exon Skipping
190
chr2:29126874-29127063
+
98.67
38.28
0
Exon Skipping
220
chr2:29139220-29139439
+
96.07
73.33
0
Exon Skipping
120
chr2:29140269-29140388
+
98.25
47.14
0
Intron Retention
302
chr2:29125550-29125851
+
8.91
27.71
0
Intron Retention
176
chr2:29161574-29161749
+
2.72
80
0
Intron Retention
5188
chr2:29134032-29139219
+
5.09
62.86
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000107290 SETX 1-to-1
Human hg19 ENSG00000107290 SETX 1-to-1
Rat rn6 ENSRNOG00000013491 Setx 1-to-1
Cow bosTau6 ENSBTAG00000024822 SETX 2-to-1
Chicken galGal4 ENSGALG00000003661 SETX 1-to-1
Chicken galGal3 ENSGALG00000003661 SETX 1-to-1
Zebrafish danRer10 ENSDARG00000022996 setx 1-to-1