MmuEX0041878 @ mm10
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29150008-29157220:+
Coord C1 exon
chr2:29150008-29150107
Coord A exon
chr2:29153938-29154096
Coord C2 exon
chr2:29156988-29157220
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGCCAATTTTTGTTTCATAGTTT
3' ss Score
7.04
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTGGCACAGGAATGGCTGAGCTCTCCAAATAAAGAGAATTTCTATCAGTTGCAATTACGAAAATTTCCAGCTGACTATAAAAAATACTGGGAGTTTCTGA
Seq A exon
TTTACTTGAACGAATCTGAACTTGCTAAACAGCTTCACCCAAAGGAAAATGATCTGGTGTTTCTGGCTCCTGAGAAGAGTTATATGGACAGGCATGGCATGCAAGATTGCAGTCACTATTACTGTGGCTATGTTCATAAGTTTCGTCGCACTTCAGTTA
Seq C2 exon
TGCGCAGTGGGAAAGCTGAGTGTTCATTATGCATACAGACACAAGATACCTTGCCAGCCAGTGTAAAAAATCTTACAAGATGCATTGTGATCAGTTCTCTGGTAACTACACAGAGGAAATTGAAAGCCATGTCTCTGTTGAGTAGTCGGAACCAGTTGGCCAGAGCTGTTCTAAATCCAAACCCCATGGACTTCTGTACCAAAGATCTACTAACTACAACTTCTGAAAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535_MULTIEX2-3/4=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGGCTGAGCTCTCCAA
R:
GCCAACTGGTTCCGACTACTC
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types