GgaEX0004778 @ galGal3
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
NA
Coordinates
chr17:7133866-7135983:-
Coord C1 exon
chr17:7135884-7135983
Coord A exon
chr17:7134664-7134840
Coord C2 exon
chr17:7133866-7134095
Length
177 bp
Sequences
Splice sites
3' ss Seq
TAAAACGTATTTTTGTGTAGGTT
3' ss Score
7.62
5' ss Seq
CTAGTAAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
CTGGCACAAGAGTGGGTAGAAAACCAGAAGATGAAAGACAAGACTTACTACTTACACTTACAGAACTTCTGTGCTGATTTGAATACGGCAGAGTTTATAG
Seq A exon
GTTATTTTGAGGAAACTGATTTGACAAAGCAGCTCCATCCAAAGGAGGATGACTTAATCTTTCTGGTTGGCCAGAAGAAGAAAAATGTCTTTGGGGAAGACAGGGAGGTTGAGGACCACCTGGTGAATCACGTTGGTCTTGTGAGGCGATTTTCTCGTGCATCTGGCTGCTTAACTA
Seq C2 exon
GACAAAATGATCAGCATACTGTCTGTCATCTTTCTGTACAAACTCGAGGAAATTTGTCATTCTTCGTAAATAATGAAGTGAAGTGTATGGTGGTTGGCTCCTTAGTGCCCACACAACGGTCATTCAAAGGTCTGCTACTACTGAGCAGGAGTCCCCTGGCTAAACCCATCATAAATCCAAGTTACAGTGATTTCTGTCCAAGGGATTTGCCTGTATCTTCAGAAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCACAAGAGTGGGTAGAA
R:
AGGGGACTCCTGCTCAGTAGT
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]