GgaEX0004778 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6502275-6504392:-
Coord C1 exon
chr17:6504293-6504392
Coord A exon
chr17:6503110-6503249
Coord C2 exon
chr17:6502275-6502504
Length
140 bp
Sequences
Splice sites
3' ss Seq
TAAAACGTATTTTTGTGTAGGTT
3' ss Score
7.62
5' ss Seq
CTTGTGAGG
5' ss Score
3.38
Exon sequences
Seq C1 exon
CTGGCACAAGAGTGGGTAGAAAACCAGAAGATGAAAGACAAGACTTACTACTTACACTTACAGAACTTCTGTGCTGATTTGAATACGGCAGAGTTTATAG
Seq A exon
GTTATTTTGAGGAAACTGATTTGACAAAGCAGCTCCATCCAAAGGAGGATGACTTAATCTTTCTGGTTGGCCAGAAGAAGAAAAATGTCTTTGGGGAAGACAGGGAGGTTGAGGACCACCTGGTGAATCACGTTGGTCTT
Seq C2 exon
GACAAAATGATCAGCATACTGTCTGTCATCTTTCTGTACAAACTCGAGGAAATTTGTCATTCTTCGTAAATAATGAAGTGAAGTGTATGGTGGTTGGCTCCTTAGTGCCCACACAACGGTCATTCAAAGGTCTGCTACTACTGAGCAGGAGTCCCCTGGCTAAACCCATCATAAATCCAAGTTACAGTGATTTCTGTCCAAGGGATTTGCCTGTATCTTCAGAAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661_MULTIEX2-2/5=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000005801fB11843
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCACAAGAGTGGGTAGAA
R:
AGGGGACTCCTGCTCAGTAGT
Band lengths:
257-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]