DreEX6082827 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3791477-3792169:+
Coord C1 exon
chr21:3791477-3791573
Coord A exon
chr21:3791689-3791862
Coord C2 exon
chr21:3791946-3792169
Length
174 bp
Sequences
Splice sites
3' ss Seq
AAAGTTGCTTTTATTTGTAGCCG
3' ss Score
5.33
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATGGCTAATGAATGGCTCAAAGAGGGAAGGGTCAAGCTGTACCTAAAAGTCCAAGGTATTGAATACAGCAATCGCACTGCTAGTGCTAGCTTCATTG
Seq A exon
CCGGCCTTTCTCAGGAATGTGATGTGAAACAAATTTACCCAAAAGAAGATGACCTTGTATTGCTTTGGCTGCCAGACAACACTGGGGCATACGCCCAGGATGAACCAAATTTTCATGATCTACATCCTCATTTTGGCTATGTATCCCGGTCCAATGTTTTAAACAGAACTCCAG
Seq C2 exon
GTTCCAGGTCAACATTAAACCTGACAATTCAGACACGCGGTAATGTATCATCAGTGAATTCCCAACCTGTGCTCTGTGAAGTTGTTGGATCATTGATCAGCATATTTCGGGAGTTTCGTGCACTGTGTTTGCTGAGAAACGGACCAATGCTACGTCCTCTTCTTGCGCCCCATGTGTCTTTTTTCACACATTCTTTGGATGGACCATCAGACCTAGATGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTCAAAGAGGGAAGGGT
R:
GGACGTAGCATTGGTCCGTTT
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]