RnoEX6016197 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7704213-7709297:+
Coord C1 exon
chr3:7704213-7704312
Coord A exon
chr3:7707207-7707365
Coord C2 exon
chr3:7709065-7709297
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGCTAATTTTTGTTTCCTAGTTT
3' ss Score
6.99
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGGCACAGGAATGGCTGAACTCTCCAAATAAAGAGAATTTCTATCAGTTGCATTTACGAAAATTTCCAGCCGACTATAAAAAATATTGGGAATTTCTGA
Seq A exon
TTTACCTGGAGGAATCTGAACTCGCTAAACAGCTTCATCCAAAGGAAAATGATCTGGTGTTTTTGGTTCCTGAGAAGAAATACATGGACAGGCATAGCGTGCAAGATCGCAGTCACTATTACTGTGGCTATGTTCATAAGTTTCGCCGCACTTCAGTCA
Seq C2 exon
TGCGCAGTGGGAAAACCGAGTGCTCCTTATGCATCCAGACACAAGATAACATGCCAGCCAGTGTTAAAGAGCTTACAAAGTGTATCGTAATCAGTTCTCTGGTGACTACACAGAGGAAACTCAAAGCCATGTCTCTGTTGAGCGGTCGGAACCAGTTGGCCAGAGCCGTTCTGAATCCAAACCCCATGGACTTCTGTACCAAAGATCTACTGACTACAACTTCTGAAAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGAATGGCTGAACTCT
R:
GACCGCTCAACAGAGACATGG
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]