HsaEX0057541 @ hg19
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:445]
Coordinates
chr9:135173467-135187243:-
Coord C1 exon
chr9:135187144-135187243
Coord A exon
chr9:135176017-135176190
Coord C2 exon
chr9:135173467-135173699
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACTTCTTCTTGTTTCATAGTTT
3' ss Score
7.66
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGGCACAAGAATGGCTCAACTCTCCAAATAGAGAGAATTTCTATCAGTTGCAAGTACGAAAATTTCCTGCCGATTATATAAAATACTGGGAGTTTGCAG
Seq A exon
TTTATCTGGAAGAATGTGAACTGGCTAAACAGCTTTATCCAAAGGAAAACGATTTGGTGTTTTTAGCTCCTGAGAGAATAAATGAAGAGAAGAAAGATACAGAGAGAAATGACATACAAGATCTCCACGAATATCATTCTGGTTATGTTCATAAATTTCGCCGCACGTCAGTCA
Seq C2 exon
TGCGTAATGGGAAAACTGAGTGTTACCTTTCCATCCAGACTCAAGAGAACTTTCCGGCCAATTTAAACGAACTTGTGAATTGTATTGTAATCAGTTCTCTGGTAACTACACAAAGGAAGTTGAAAGCCATGTCTCTGTTGGGTAGTCGGAACCAACTGGCTAGAGCTGTTCTGAATCCAAACCCTATGGACTTCTGTACAAAAGATTTACTGACTACAACATCTGAGAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.123 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAAGAATGGCTCAACT
R:
TGGTTCCGACTACCCAACAGA
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)