HsaEX0057541 @ hg38
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132298080-132311856:-
Coord C1 exon
chr9:132311757-132311856
Coord A exon
chr9:132300630-132300803
Coord C2 exon
chr9:132298080-132298312
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACTTCTTCTTGTTTCATAGTTT
3' ss Score
7.66
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGGCACAAGAATGGCTCAACTCTCCAAATAGAGAGAATTTCTATCAGTTGCAAGTACGAAAATTTCCTGCCGATTATATAAAATACTGGGAGTTTGCAG
Seq A exon
TTTATCTGGAAGAATGTGAACTGGCTAAACAGCTTTATCCAAAGGAAAACGATTTGGTGTTTTTAGCTCCTGAGAGAATAAATGAAGAGAAGAAAGATACAGAGAGAAATGACATACAAGATCTCCACGAATATCATTCTGGTTATGTTCATAAATTTCGCCGCACGTCAGTCA
Seq C2 exon
TGCGTAATGGGAAAACTGAGTGTTACCTTTCCATCCAGACTCAAGAGAACTTTCCGGCCAATTTAAACGAACTTGTGAATTGTATTGTAATCAGTTCTCTGGTAACTACACAAAGGAAGTTGAAAGCCATGTCTCTGTTGGGTAGTCGGAACCAACTGGCTAGAGCTGTTCTGAATCCAAACCCTATGGACTTCTGTACAAAAGATTTACTGACTACAACATCTGAGAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAAGAATGGCTCAACT
R:
TGGTTCCGACTACCCAACAGA
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development