BtaEX6046961 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102403216-102409196:-
Coord C1 exon
chr11:102409097-102409196
Coord A exon
chr11:102405489-102405662
Coord C2 exon
chr11:102403216-102403448
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACTTCTTACTGTTTTACAGTTT
3' ss Score
8.08
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTGGCACAGGAATGGATCAGCTCTCCAAACAAAGAGAAATTCCATCAGTTACATTTACGAAAATTTCCTGGTGATTATAAAAAATACTGGGAGTTTGTGG
Seq A exon
TTTATCTTGAGGAATGTGAGCTAGCTAAACAGCTTCATCCAAGGGAAAATGATTTGGTGTTTTTGGTTCCTGAAAGACTCAATGAGGAGAAGAAAGATTTAGAGTGGAGTCACCTGGAGGATGCCTGTGAATATTATTGTGGCTATGTTCATAAATTCCGTCGTACTTCAGTCA
Seq C2 exon
TGCATAATGGGAAATTTGAGTGTTCGGTTTCCATCCAGACTCAAGATAATTTACCAGTCAATTTAAATGAACTCGTGAAATGCTTTGTAATCAGCTCTCTGGTGACTACACAAAGGAAGTTGAAAGCCATGTCTTTGCTGAGTGGTCGGAACCAACTGGCCAGAGCCATTCTGAATCCAAACCCCATGGACTTCTGTACAAAAGATTTACCAACTGCAACATCTGAGAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822-'14-15,'14-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACAGGAATGGATCAGCTC
R:
CCACTCAGCAAAGACATGGCT
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]