MmuEX0041875 @ mm10
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29161750-29163049:+
Coord C1 exon
chr2:29161750-29161865
Coord A exon
chr2:29162734-29162823
Coord C2 exon
chr2:29162978-29163049
Length
90 bp
Sequences
Splice sites
3' ss Seq
CATGCTCAGCACTGTTGCAGGAT
3' ss Score
3.16
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAAAAGACTTGCCTTCTCATATTCAAGAAATGCTTAGAAGAAAAGAAATTCTAGATGCTCAACTTGATGAGCTTTCTCGTCAGCGAGCTCTGTGCCGAGGTGGGCGGGAGATGCAG
Seq A exon
GATTGTTGTGTACCTTAGACATGAATGAAGGATTGAAACTCCGAGGCTTGAGACAGCAAACGCGTGTGGAGACATAATTGAGCCCATCAG
Seq C2 exon
AGGCAAGAATTAGATGAACACATTGCCATAGTCTCAAAAGAAAGGCAAGAACTTGCTTCGAAAATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(13.3=100)
A:
PF130861=AAA_11=PD(0.1=0.0)
C2:
PF130861=AAA_11=FE(11.0=100)
Main Inclusion Isoform:
ENSMUST00000061578fB3651
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGCCTTCTCATATTCAAGA
R:
GCAAGTTCTTGCCTTTCTTTTGAGA
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types