MmuEX0041877 @ mm10
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29126874-29144061:+
Coord C1 exon
chr2:29126874-29127063
Coord A exon
chr2:29130180-29130390
Coord C2 exon
chr2:29143890-29144061
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCATCCTTCTGCAGGTT
3' ss Score
12.01
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
CTACAGGTGCAGCATGAGCACATGCTGTTGGTGTACTCCAGGTGGGTCTTCCACCATTGATGTCCTAAAGCGCTATGCATCTAGCACTGGGTCAAGTGAATTTCAGACAGCTGATGAAGACCTCTGCTACTGCTTAGAGTGTGTGGCTGAGTACCACCGAGCCAGAGATGAGGTGCCGTTCTTGCACGAG
Seq A exon
GTTTTATGGGAGCTAGAAACCTTACGCCTCGTAAGTCACTTTGAGAAGTCCATGAAGGCAGAAGCTGAAGATGACGATGATTTATATATAGTAGACAACAATGGAGAGGAACAGCTGTTTGACTGTAGTGGCCAAGATTTTGAAAATAAGCTTCGAGTTCCTCTTTTTGAAATACTGAAGTACCCTTACTTGCTTCTGCATGAGCGTGTTA
Seq C2 exon
ATGATAGCATGGATCCTTTTTGGCCAGCATTACACTGTTTCATGGTGATTCTTGATCGCCTTGGATCTAAGGTATGGGGTCAACTTATTGACCCTATTGAAGCATTTCAAACCATCATTAACAACGAGAGCTACAACAGAGAGATCCAGAATATACGGAACAGCTCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535_MULTIEX1-3/6=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTACTCCAGGTGGGTCTT
R:
TCTCTGTTGTAGCTCTCGTTGT
Band lengths:
303-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types