GgaEX6015270 @ galGal3
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
NA
Coordinates
chr17:7144850-7147404:-
Coord C1 exon
chr17:7147224-7147404
Coord A exon
chr17:7145110-7145320
Coord C2 exon
chr17:7144850-7144959
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTATCTCCCACACTGAATAGGTT
3' ss Score
6.82
5' ss Seq
TCAGTATGT
5' ss Score
5
Exon sequences
Seq C1 exon
AATGAACGTATGTCGATGGTGTACACCGAGTGGTCTTGATGCCACTGAATACCTGAAGAGCTATGCTTCTAAACAGTTGTCCCCAGAAGATCTTGAAGGTTCCAACGATGATCTCTGTTACTGCTTGGAGTGCGTGGTGGAATACCACAAAGCAAGGGAGAAATTGCCAAGCTTGCATCAG
Seq A exon
GTTTTATTGGAATTGGAAACATCCCGTCTCGTAGCCCACATTGAAAAATCCATAAGAGAAGAAGCTGGAGAAGATGATGAGTTGTTTATAGTGGATGAGAATGGAGAGACACAGCTGCCTGTTTATGTTGGACCAGATTTTGAGAATAACCTGAGAGTGCCACTTCTAGAAGTGCTGAAATACCCATATCTGCTGCTGCATGAGAAAGTCA
Seq C2 exon
GTGAGCTTTGTGTAGAAGTGCTGTGTAGAATGGAAGAAAATCACACCTCCTTTCAGGTTTTTGAGAAATATCCAGGAATTTATCTATTTTTGGTACACCCAAATGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAACGTATGTCGATGGTGT
R:
ATTCCTGGATATTTCTCAAAAACCTG
Band lengths:
260-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]