GgaEX6015270 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6513259-6515813:-
Coord C1 exon
chr17:6515633-6515813
Coord A exon
chr17:6513519-6513729
Coord C2 exon
chr17:6513259-6513368
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTATCTCCCACACTGAATAGGTT
3' ss Score
6.82
5' ss Seq
TCAGTATGT
5' ss Score
5
Exon sequences
Seq C1 exon
AATGAACGTATGTCGATGGTGTACACCGAGTGGTCTTGATGCCACTGAATACCTGAAGAGCTATGCTTCTAAACAGTTGTCCCCAGAAGATCTTGAAGGTTCCAACGATGATCTCTGTTACTGCTTGGAGTGCGTGGTGGAATACCACAAAGCAAGGGAGAAATTGCCAAGCTTGCATCAG
Seq A exon
GTTTTATTGGAATTGGAAACATCCCGTCTCGTAGCCCACATTGAAAAATCCATAAGAGAAGAAGCTGGAGAAGATGATGAGTTGTTTATAGTGGATGAGAATGGAGAGACACAGCTGCCTGTTTATGTTGGACCAGATTTTGAGAATAACCTGAGAGTGCCACTTCTAGAAGTGCTGAAATACCCATATCTGCTGCTGCATGAGAAAGTCA
Seq C2 exon
GTGAGCTTTGTGTAGAAGTGCTGTGTAGAATGGAAGAAAATCACACCTCCTTTCAGGTTTTTGAGAAATATCCAGGAATTTATCTATTTTTGGTACACCCAAATGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-'9-4,'9-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAACGTATGTCGATGGTGT
R:
ATTCCTGGATATTTCTCAAAAACCTG
Band lengths:
260-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]