DreEX0065570 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3777130-3784436:+
Coord C1 exon
chr21:3777130-3777333
Coord A exon
chr21:3781896-3782106
Coord C2 exon
chr21:3784327-3784436
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTATTTTTTGCAGTGT
3' ss Score
9.05
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GAGATCAAGATGGAGAAGTGTCTGTGGTGTACCACATCTCTGGATTCAGAGGGTGATGCAGCGATGGTCGCCCTGTTGCGCAGCTACTGCTCAGGACAGCAGTCTGAAATGCAGATGGACTCTCTGAATGAAGACCTCTGCTGCTGTCTTGAGTGTGTGGTGGAGTATCATCGAGCCAGAGAGAATGTCCCTGATCTGCACAAG
Seq A exon
TGTTTGTGGGAAATGGAGATTGCTCGACTCCTGCGTGTGTTGGGGTCCGTTTTGGATCAGGAGCTGGGAGATGAAGATGAAATCTATATCATTGAAGGCGATCATGAGCAGCCGGTGTTAAAGTTCTCTCCTTCAGATATCCATGACCGTATCTTCATCCCACTGTGTGAAATTTTGAGATATCCATACCTGCTGTGCTGCCGAGAGCTGT
Seq C2 exon
CTGATATGGTGGTTAGGGTCTTGTACAAGTTGCAGGATTGGCAGCAAACTTTGAGTTGGTCTGAGAAGTATCAGGGAACATATCTGCTTCTCGTTCATCCCGATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996-'4-2,'4-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127262=SEN1_N=PU(18.8=46.2)
A:
PF127262=SEN1_N=FE(15.5=100)
C2:
PF127262=SEN1_N=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGTGTCTGTGGTGTACC
R:
TCGGGATGAACGAGAAGCAGA
Band lengths:
296-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]