BtaEX0032103 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102435684-102452693:-
Coord C1 exon
chr11:102452517-102452693
Coord A exon
chr11:102437988-102438198
Coord C2 exon
chr11:102435684-102435793
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTCTTTTCCTGTAGGTT
3' ss Score
12.38
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATGAGTACATGTTGTTGGTGTACCCCAGGTGGTACTTCCACCACTGACTTCCTACAACGCTATGCATCCAGGACCCACTCCAGTGAATTTCAGACAGCTGATGAAGACCTCTGCTACTGCTTGGAGTGTGTGGCTGAATACCACAAAGCAAGGGACGAATTGCCGTTCTTACATGAG
Seq A exon
GTTTTATGGGAATTAGAAACCTTACGTCTCATAAATCACTTTGAAAGATCCATGAAGGCAGAAATTGGAGATGATGATGAGTTATATATAGTAGACAACAACGGAGAGGCACAGCTGTTCGATTTCACTGGCCAAGACTTTGAAAATAAGCTTCGAGTTCCTCTTCTTGAAATACTGAAATATCCATATCTGCTTTTACATGAGCATGTCA
Seq C2 exon
ATGAATTATGTGTTGAAGCACTTTGCCGGATGGAACAAGCTAATTGCTCCTTTCAAGTTTTTGACAAACATCCAGGGATCTATTTATTTTTGGTTCATCCCAATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTTGTTGGTGTACCCCA
R:
TGAACCAAAAATAAATAGATCCCTGG
Band lengths:
268-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development