MmuEX0041881 @ mm10
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29125852-29130390:+
Coord C1 exon
chr2:29125852-29125963
Coord A exon
chr2:29126874-29127063
Coord C2 exon
chr2:29130180-29130390
Length
190 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCTTGTTCTTTTTAGCTA
3' ss Score
8.96
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAATGTTCTTTTTGGGGGCCAAAGTGTGAATCTGTCTGAATGCAGAGCCACATCTCACAGATAAGCCCAGCAATCACAAAGAGCATCACTTCTCTGTAGGACCTTGGTCAAG
Seq A exon
CTACAGGTGCAGCATGAGCACATGCTGTTGGTGTACTCCAGGTGGGTCTTCCACCATTGATGTCCTAAAGCGCTATGCATCTAGCACTGGGTCAAGTGAATTTCAGACAGCTGATGAAGACCTCTGCTACTGCTTAGAGTGTGTGGCTGAGTACCACCGAGCCAGAGATGAGGTGCCGTTCTTGCACGAG
Seq C2 exon
GTTTTATGGGAGCTAGAAACCTTACGCCTCGTAAGTCACTTTGAGAAGTCCATGAAGGCAGAAGCTGAAGATGACGATGATTTATATATAGTAGACAACAATGGAGAGGAACAGCTGTTTGACTGTAGTGGCCAAGATTTTGAAAATAAGCTTCGAGTTCCTCTTTTTGAAATACTGAAGTACCCTTACTTGCTTCTGCATGAGCGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535_MULTIEX1-2/6=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTTCTTTTTGGGGGCCAA
R:
TGGCCACTACAGTCAAACAGC
Band lengths:
245-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types