GgaEX1052028 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6513519-6517741:-
Coord C1 exon
chr17:6517570-6517741
Coord A exon
chr17:6515633-6515813
Coord C2 exon
chr17:6513519-6513729
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTTCTTTGTAAAGAAT
3' ss Score
5.82
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GATCTCTGAAATACAGTCGAGGCCCGGGTACCGGCAGCTGGGATGTGCTGTGCTCTGCTGGAGGGCAGCTGTGGCTGCAGGCCTTAACCCCCGACCCTGAGCACAGGGCAGCCCCGGGCCTTCCCACCATGTGACCCAGAACTCCTGCAGCAAATCGCTTCCTTTTCCAAAG
Seq A exon
AATGAACGTATGTCGATGGTGTACACCGAGTGGTCTTGATGCCACTGAATACCTGAAGAGCTATGCTTCTAAACAGTTGTCCCCAGAAGATCTTGAAGGTTCCAACGATGATCTCTGTTACTGCTTGGAGTGCGTGGTGGAATACCACAAAGCAAGGGAGAAATTGCCAAGCTTGCATCAG
Seq C2 exon
GTTTTATTGGAATTGGAAACATCCCGTCTCGTAGCCCACATTGAAAAATCCATAAGAGAAGAAGCTGGAGAAGATGATGAGTTGTTTATAGTGGATGAGAATGGAGAGACACAGCTGCCTGTTTATGTTGGACCAGATTTTGAGAATAACCTGAGAGTGCCACTTCTAGAAGTGCTGAAATACCCATATCTGCTGCTGCATGAGAAAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-'8-3,'8-2,9-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATGTGCTGTGCTCTG
R:
GGCAGCTGTGTCTCTCCATTC
Band lengths:
254-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]