GgaEX1052028 @ galGal3
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
NA
Coordinates
chr17:7145110-7149310:-
Coord C1 exon
chr17:7149161-7149310
Coord A exon
chr17:7147224-7147404
Coord C2 exon
chr17:7145110-7145320
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTTCTTTGTAAAGAAT
3' ss Score
5.82
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CCCGGGTACCGGCAGCTGGGATGTGCTGTGCTCTGCTGGAGGGCAGCTGTGGCTGCAGGCCTTAACCCCCGACCCTGAGCACAGGGCAGCCCCGGGCCTTCCCACCATGTGACCCAGAACTCCTGCAGCAAATCGCTTCCTTTTCCAAAG
Seq A exon
AATGAACGTATGTCGATGGTGTACACCGAGTGGTCTTGATGCCACTGAATACCTGAAGAGCTATGCTTCTAAACAGTTGTCCCCAGAAGATCTTGAAGGTTCCAACGATGATCTCTGTTACTGCTTGGAGTGCGTGGTGGAATACCACAAAGCAAGGGAGAAATTGCCAAGCTTGCATCAG
Seq C2 exon
GTTTTATTGGAATTGGAAACATCCCGTCTCGTAGCCCACATTGAAAAATCCATAAGAGAAGAAGCTGGAGAAGATGATGAGTTGTTTATAGTGGATGAGAATGGAGAGACACAGCTGCCTGTTTATGTTGGACCAGATTTTGAGAATAACCTGAGAGTGCCACTTCTAGAAGTGCTGAAATACCCATATCTGCTGCTGCATGAGAAAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATGTGCTGTGCTCTG
R:
GGCAGCTGTGTCTCTCCATTC
Band lengths:
254-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]