DreEX0065563 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3764328-3782106:+
Coord C1 exon
chr21:3764328-3764448
Coord A exon
chr21:3777130-3777333
Coord C2 exon
chr21:3781896-3782106
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTGTCTGTGCACAGGAG
3' ss Score
8.36
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAGAGAGGGGACATGTAAAGCACCGTTGAGTGGATTAAAAAGCGTTTACGACACTGTCAGTGGAGGAATGAGATGAAGCAGCGCTGAGAGACTCAAAGTTTCCTCTGTCGGAGCTTTGTGG
Seq A exon
GAGATCAAGATGGAGAAGTGTCTGTGGTGTACCACATCTCTGGATTCAGAGGGTGATGCAGCGATGGTCGCCCTGTTGCGCAGCTACTGCTCAGGACAGCAGTCTGAAATGCAGATGGACTCTCTGAATGAAGACCTCTGCTGCTGTCTTGAGTGTGTGGTGGAGTATCATCGAGCCAGAGAGAATGTCCCTGATCTGCACAAG
Seq C2 exon
TGTTTGTGGGAAATGGAGATTGCTCGACTCCTGCGTGTGTTGGGGTCCGTTTTGGATCAGGAGCTGGGAGATGAAGATGAAATCTATATCATTGAAGGCGATCATGAGCAGCCGGTGTTAAAGTTCTCTCCTTCAGATATCCATGACCGTATCTTCATCCCACTGTGTGAAATTTTGAGATATCCATACCTGCTGTGCTGCCGAGAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996-'1-1,'1-0,4-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127262=SEN1_N=PU(18.8=46.2)
C2:
PF127262=SEN1_N=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGCACCGTTGAGTGGAT
R:
GCAGCACAGCAGGTATGGATA
Band lengths:
308-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]