RnoEX0079933 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7682194-7689008:+
Coord C1 exon
chr3:7682194-7682294
Coord A exon
chr3:7686580-7686763
Coord C2 exon
chr3:7688798-7689008
Length
184 bp
Sequences
Splice sites
3' ss Seq
TCGTTTCTGTTTAGTTACAGATA
3' ss Score
3.54
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGGGCGAAAGTGTGACTATATCTGGATGCAGAGCTACATCTATTCACAGATAAGCCCAGCAAGCTCAAAGAGGATCACTTCACTGTGAGACGTTTGTCAAG
Seq A exon
ATACAGAATGAGCACATGCTGCTGGTGCACTCCAGGTGGTTCTTCCACCATTGATGTCCTGAAGTGCTATGCATCTAGCACTGGATCAAGTGAATTTCAGACAGCTGATGAAGACCTCTGCTACTGCTTAGAGTGTGTGGCTGAGTACCACAGAGCCAGAGATGAGGTGCCATTCTTGCATGAG
Seq C2 exon
GTTTTATGGGAGCTAGAAACCTTACGCCTCATAAGTCACTTTGAAAAGTCCATGAAGGCAGAAGCTGAGGATGACGACGAGTTATATATAGTAGACAACAATGGAGAGGAGCAGCTCTTTGACTGTAGTGGCCAAGATTTTGAAAATAGGCTTAGAGTTCCTCTTTTTGAAATACTGAAGTACCCTTACTTGCTTCTGCATGAGCGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCAGCAAGCTCAAAGAG
R:
GCAGAAGCAAGTAAGGGTACTTCA
Band lengths:
249-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]