MmuEX0041879 @ mm10
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:29173557-29176975:+
Coord C1 exon
chr2:29173557-29173721
Coord A exon
chr2:29174319-29174483
Coord C2 exon
chr2:29176877-29176975
Length
165 bp
Sequences
Splice sites
3' ss Seq
GGGTTTATTTCACCTCACAGTTT
3' ss Score
6.61
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
CTCATATATAAATGTTCAAGAAATAAAGTTGGTGATGGAAATAATTAAACTTATTAAAGAGAAAAGAAAAGATATTTCCTTCCGAAATATTGGCATAATAACCCATTACAAGGCTCAGAAGACGATGATCCAGAAGGATTTGGAGAAAGAATTTGATAAGAAAGG
Seq A exon
TTTATTACAGCCCATCATGATGGGGGAATCAAGGCAGCAAGACTCTGAAGCATCCAAGCAGCAGCAGAAGAGCAGTGAATTTATGCATGCTAGTGATGAGCTCGGTTCCTCCACTGTTACACAGTCCGGGATCTCCAGCCTAGAGAATGGTGCCACCCACACTGG
Seq C2 exon
ACCTGCAGAAGTGGACACAGTAGATGCCTTCCAGGGCCGGCAGAAAGACTGTATCATCGTTACCTGTGTCAGGGCAAGTGCTGTGCAAGGCTCAATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.782 C2=0.147
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(27.2=100)
A:
PF130871=AAA_12=PD(22.3=74.5)
C2:
PF130871=AAA_12=FE(16.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAAGAAATAAAGTTGGTGATGG
R:
CCTATTGAGCCTTGCACAGCA
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types