RnoEX0079943 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7722442-7725807:+
Coord C1 exon
chr3:7722442-7722606
Coord A exon
chr3:7722985-7723149
Coord C2 exon
chr3:7725709-7725807
Length
165 bp
Sequences
Splice sites
3' ss Seq
GGGTTTATTTCACCTCACAGTTT
3' ss Score
6.61
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
CTCATACATAAATGTTCAAGAAATAAAGTTGGTGATGGAAATAATTAAACTTATTAAAGAGAAAAGAAAAGATATTTCCTTCCGAAATATTGGCATAATAACTCATTACAAGGCTCAGAAGACGATGATCCAGAAGGATTTGGAGAAAGAATTTGATAAGAAAGG
Seq A exon
TTTATTACAGCCCATCATGATGGGGGAATCAAGGCAACAAGACTCGGAAGCCTCCAAGCAGCAGCAGAAGAGCAGTGAATGTATGCATGCTAGTGATGAGCTCGATTCCTCCACTGTTACACAGTCCGGGATCTCCAGCCTAGAGAATGGTGCCACCCACACTGG
Seq C2 exon
ACCTGCAGAAGTGGATACGGTAGATGCCTTCCAGGGCCGGCAGAAAGACTGCATCATCGTTACCTGTGTCAGGGCAAGTGCTGTGCAAGGCTCGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.625 C2=0.074
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(27.2=100)
A:
PF130871=AAA_12=FE(21.4=100)
C2:
PF130871=AAA_12=FE(16.3=100)
Main Inclusion Isoform:
ENSRNOT00000017984fB13235
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAAGAAATAAAGTTGGTGATGG
R:
CTATCGAGCCTTGCACAGCAC
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]