HsaALTD1053075-3/7 @ hg38
Alternative 5'ss
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132353649-132355057:-
Coord C1 exon
chr9:132354957-132355057
Coord A exon
chr9:132354917-132354956
Coord C2 exon
chr9:132353649-132353755
Length
40 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
TTTTTGTTTTTTAATTTCAGAAA
3' ss Score
9.7
Exon sequences
Seq C1 exon
GGCCGACTCAGCGCGGGGGCGGGGCCTACCTCGCGGCAACAGCTGGTTGGTAGCTGCGGCTGCGGGCCCGCACTTCCGCTGGTGGCCTAGAGCGGGGCCCG
Seq A exon
GTATGGAGGTGGGCTAGAGGCCGACGCCAGCCAGAGAGCG
Seq C2 exon
AAATGTTCTTTTGGGGCCAGAGTCTGGGCATATATGAATGCAAATCCGTGTTTGTTCACAACTAAGCCCAGCTGAGACGATCACTTTTCTGTAGGCCATTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290-1-1,2-1,3-1,4-1,5-1,6-1,7-1-3/7
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGGTAGCTGCGGC
R:
CGTCTCAGCTGGGCTTAGTTG
Band lengths:
138-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains