HsaEX6063624 @ hg38
Exon Skipping
Gene
ENSG00000107290 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr9:132349252-132354985:-
Coord C1 exon
chr9:132354917-132354985
Coord A exon
chr9:132353649-132353755
Coord C2 exon
chr9:132349252-132349435
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTTAATTTCAGAAA
3' ss Score
9.7
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTTCCGCTGGTGGCCTAGAGCGGGGCCCGGTATGGAGGTGGGCTAGAGGCCGACGCCAGCCAGAGAGCG
Seq A exon
AAATGTTCTTTTGGGGCCAGAGTCTGGGCATATATGAATGCAAATCCGTGTTTGTTCACAACTAAGCCCAGCTGAGACGATCACTTTTCTGTAGGCCATTTGTCCAG
Seq C2 exon
GTACAGAATGAGCACATGTTGTTGGTGTACGCCAGGTGGTGCTTCCACCATTGACTTCCTAAAGCGCTATGCTTCCAACACTCCGTCCGGTGAATTTCAAACAGCCGACGAAGACCTCTGCTACTGCTTGGAGTGTGTGGCTGAGTACCACAAAGCAAGAGATGAATTGCCATTCTTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107290-'3-5,'3-1,9-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139001=GVQW=PU(8.7=3.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGCTGGTGGCCTAGAG
R:
TGCAAGAATGGCAATTCATCTCT
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains