MmuEX0008845 @ mm9
Exon Skipping
Gene
ENSMUSG00000017412 | Cacnb4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:MGI Symbol;Acc:MGI:103301]
Coordinates
chr2:52321118-52322840:-
Coord C1 exon
chr2:52322764-52322840
Coord A exon
chr2:52321414-52321433
Coord C2 exon
chr2:52321118-52321198
Length
20 bp
Sequences
Splice sites
3' ss Seq
CTCTCGTTGTTGTCTTTTAGCAA
3' ss Score
8.87
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAACAACAG
Seq A exon
CAAAACAGAAGCAGAAAGTG
Seq C2 exon
ACGGAGCACATTCCTCCGTATGACGTCGTGCCGTCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017412_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.963 A=1.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCGAGCAACTCCCACAAC
R:
AACCTTTCAGTGATGGCCCCA
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types