MmuEX6101322 @ mm9
Exon Skipping
Gene
ENSMUSG00000017412 | Cacnb4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:MGI Symbol;Acc:MGI:103301]
Coordinates
chr2:52320130-52321433:-
Coord C1 exon
chr2:52321414-52321433
Coord A exon
chr2:52321118-52321198
Coord C2 exon
chr2:52320130-52320188
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGTTGACTTGTCTTTTTCAGACG
3' ss Score
9.49
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
CAAAACAGAAGCAGAAAGTG
Seq A exon
ACGGAGCACATTCCTCCGTATGACGTCGTGCCGTCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAG
Seq C2 exon
GTAACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017412-'12-13,'12-12,13-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: