MmuEX6101322 @ mm10
Exon Skipping
Gene
ENSMUSG00000017412 | Cacnb4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:MGI Symbol;Acc:MGI:103301]
Coordinates
chr2:52455600-52465913:-
Coord C1 exon
chr2:52465894-52465913
Coord A exon
chr2:52465598-52465678
Coord C2 exon
chr2:52455600-52455709
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGTTGACTTGTCTTTTTCAGACG
3' ss Score
9.49
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
CAAAACAGAAGCAGAAAGTG
Seq A exon
ACGGAGCACATTCCTCCGTATGACGTCGTGCCGTCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAG
Seq C2 exon
GATATCAATAACAAGAGTGACAGCTGACATTTCTCTTGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCCAACACCAGATCCAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017412_MULTIEX1-4/5=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.089 C2=0.126
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(11.2=55.6)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types