GgaEX1012553 @ galGal3
Exon Skipping
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36971005-36973044:-
Coord C1 exon
chr7:36973025-36973044
Coord A exon
chr7:36972839-36972919
Coord C2 exon
chr7:36971005-36971063
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGGATGTTTTCCTCTTCCAGACA
3' ss Score
8.28
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
CAAAACAGAAACAAAAAGTG
Seq A exon
ACAGAACACGTTCCCCCGTACGACGTGGTGCCCTCAATGAGGCCCGTTGTCTTGGTGGGGCCGTCGCTGAAAGGCTATGAG
Seq C2 exon
GTGACAGACATGATGCAGAAAGCTCTCTTTGACTTCCTGAAGCACAGGTTTGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511-'7-10,'7-9,8-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=0.193 C2=0.000
Domain overlap (PFAM):
C1:
PF0308010=DUF239=FE(5.1=100)
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]