DmeEX6006586 @ dm6
Exon Skipping
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11159880-11163098:-
Coord C1 exon
chr2L:11162984-11163098
Coord A exon
chr2L:11161555-11161834
Coord C2 exon
chr2L:11159880-11160336
Length
280 bp
Sequences
Splice sites
3' ss Seq
TTTGTGACCACACTTTACAGCAT
3' ss Score
5.44
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
ACGTATTGGAAGGCCACCCACCCGGACATTCGAGCAGTGCCGCCCATCGCCCGCCCCCTGCCGCAGGAGGCCTCGCCCTCCGCAGATCCCGCGCGTCTGGGACCGACGCCTCCAG
Seq A exon
CATTCACAGCACGTGACATACCCGGTCCCTTTACAACAATGCTATAGATCAAAACGAGTTCAAATCTAAATCAAGCACCACGACCAACACAACTGCGACATCAACAGTACAAAATGCCAAAGACAATTGAACCCGAATTGAAATTGAAATTGAAAACCAAAAGCAAAAACCAAATCAACTGGAACTAGCAAAACTAGCACCCACCGACCGACATCTCCGACGATCTCCACCAGTACAACTCTTTGCCAAGTCAAGACATCCACGAAATCCATGTGATGAG
Seq C2 exon
GAGGAACCTCTTACCAGCACAGCCGCCGACAACCGACCTCGGTACGCCACCAGGAGCGCGGCGGAGGGGTGGGCGCAGGCGGCGGAGGTGGAGGCGTCGGCGGTGGCTACGAGCGGGACCGCGAACGGGAGCGGTACGAGCGGCGCGAGCGTGACCTCATGCACTACGATCTCAATAGCGACGAGCTGCTGGACGAGCGCAACTTTGAGTATCCGGCGATGAGGAGCGGTCCCAGCGGCGCCTCCCACCACGGCCATCTGTCCAGGGGCGGACGCCTGCTGGAGGATCCGGACTTTGAGCGCGAAGAGGCCCAGATGCGGATGAGCAGCTCACGCTACGGACCCTCGACCAGGATCGACGACCCACGGGATCTGCCGCGTGGCGCCACCGTTGTCGATCGCGATGAATACAGTCCGCACAGAGGTGGTGGGAGTAGTAGGAGAATGCTTAATGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822-'18-18,'18-16,20-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.400 C2=0.944
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(0.5=2.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0310211
Main Skipping Isoform:
FBpp0310212
Other Inclusion Isoforms:
FBpp0310210
Other Skipping Isoforms:
FBpp0289392, FBpp0297478, FBpp0301962, FBpp0301963
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATTGGAAGGCCACCCAC
R:
GCTCGTCGCTATTGAGATCGT
Band lengths:
300-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)