BtaEX6009774 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44411623-44413292:+
Coord C1 exon
chr2:44411623-44411642
Coord A exon
chr2:44411868-44411948
Coord C2 exon
chr2:44413234-44413292
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTCCAATCGTCTCTTTCAGACG
3' ss Score
9.75
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
CAAAACAGAAGCAAAAAGTG
Seq A exon
ACGGAGCACATCCCCCCCTACGACGTGGTGCCATCCATGCGTCCGGTGGTGCTGGTGGGGCCATCGCTGAAGGGTTATGAG
Seq C2 exon
GTCACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297-'13-11,'13-10,14-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]