DmeEX0003619 @ dm6
Exon Skipping
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11159880-11163098:-
Coord C1 exon
chr2L:11162984-11163098
Coord A exon
chr2L:11161068-11161290
Coord C2 exon
chr2L:11159880-11160336
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGTACTTGTTTTTAGTTA
3' ss Score
7.63
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
ACGTATTGGAAGGCCACCCACCCGGACATTCGAGCAGTGCCGCCCATCGCCCGCCCCCTGCCGCAGGAGGCCTCGCCCTCCGCAGATCCCGCGCGTCTGGGACCGACGCCTCCAG
Seq A exon
TTACACCGGGTGTTGTGCGCCTGTAAACTGCCGCAATCCGCGCCAAACCCGATTTCTCACATTCTTCCGGGTGTTTTCCTAGATCAGCTCAACTCAACCCAAATCAGCTCAGTTATAATATATACTATATATATATGTACATGTATTCCGTTATTGTCGAACCTTATGTTTTCACCATTTCAAGTTGCAAAAGCAAATCATCTAATCGTTTAGATCTGGTTTA
Seq C2 exon
GAGGAACCTCTTACCAGCACAGCCGCCGACAACCGACCTCGGTACGCCACCAGGAGCGCGGCGGAGGGGTGGGCGCAGGCGGCGGAGGTGGAGGCGTCGGCGGTGGCTACGAGCGGGACCGCGAACGGGAGCGGTACGAGCGGCGCGAGCGTGACCTCATGCACTACGATCTCAATAGCGACGAGCTGCTGGACGAGCGCAACTTTGAGTATCCGGCGATGAGGAGCGGTCCCAGCGGCGCCTCCCACCACGGCCATCTGTCCAGGGGCGGACGCCTGCTGGAGGATCCGGACTTTGAGCGCGAAGAGGCCCAGATGCGGATGAGCAGCTCACGCTACGGACCCTCGACCAGGATCGACGACCCACGGGATCTGCCGCGTGGCGCCACCGTTGTCGATCGCGATGAATACAGTCCGCACAGAGGTGGTGGGAGTAGTAGGAGAATGCTTAATGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822-'18-18,'18-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=1.000 C2=0.944
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(0.5=2.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0301964
Main Skipping Isoform:
FBpp0310212
Other Inclusion Isoforms:
FBpp0289763
Other Skipping Isoforms:
FBpp0289392, FBpp0297478, FBpp0301962, FBpp0301963
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATTGGAAGGCCACCCAC
R:
GCTCGTCGCTATTGAGATCGT
Band lengths:
300-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)