DmeINT0017607 @ dm6
Intron Retention
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11159880-11161290:-
Coord C1 exon
chr2L:11161068-11161290
Coord A exon
chr2L:11160337-11161067
Coord C2 exon
chr2L:11159880-11160336
Length
731 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
3' ss Seq
CCGTGTTGGGCGTTTTGCAGGAG
3' ss Score
6.93
Exon sequences
Seq C1 exon
TTACACCGGGTGTTGTGCGCCTGTAAACTGCCGCAATCCGCGCCAAACCCGATTTCTCACATTCTTCCGGGTGTTTTCCTAGATCAGCTCAACTCAACCCAAATCAGCTCAGTTATAATATATACTATATATATATGTACATGTATTCCGTTATTGTCGAACCTTATGTTTTCACCATTTCAAGTTGCAAAAGCAAATCATCTAATCGTTTAGATCTGGTTTA
Seq A exon
GTGAGTACCGAAACCCCCACGATGTGTTTGCGTTACATTATTTTTTGAGCGATTTTACCCATTCCATATTAGTGTTAAAGTTATACTCGTAACTGTCCCCCGAAATTATCCTTGTTTCCCTAAATGTACCATGCATAACTGACGCTAGGTTTCGATCATCTGCTGTTTTTTTTTCAGCGAATATATTGTTTATTACTACTTTGAAGGTTTAACCAAATGTCTTATTTATTACTAACGTTTTAAAGTTACAAGCTAATTAACCAAAAAATAGCTAAACAAATGCGAGCATTTGTTTATTAGATGCTCACATGTTTATTACATAGAAAAGTTACCAGGTAGTCAGCCACATAAATAATTCTTTAAATAATGTACTTTCAATAAATTAAATTATATTTTCTAAATAATTACTTGGTAATTATACCATAGCCCCAAGTATAAATGTATTTAATATACCAATCTTATAATGCTCTCATCGCTTCCTATATGACTAGATTCCTTTGTAATATAAATCATTATGAGGTATCTCCTTTAGTTAGAGACCGCACTGAACACAAAATCCCAAATGACCAATTTACCGGTATTGGATATCTAAAGCCTGATACCAACCTTTCGCCTATTGACCCTTTTTTGAATGCTTTAGTTCTGGTTCTGTTTTCCGTTTTTCGTTACCCTTAAATGCATTTGTGTAATAACAATTTCACTAACATATTGCCGTGTTGGGCGTTTTGCAG
Seq C2 exon
GAGGAACCTCTTACCAGCACAGCCGCCGACAACCGACCTCGGTACGCCACCAGGAGCGCGGCGGAGGGGTGGGCGCAGGCGGCGGAGGTGGAGGCGTCGGCGGTGGCTACGAGCGGGACCGCGAACGGGAGCGGTACGAGCGGCGCGAGCGTGACCTCATGCACTACGATCTCAATAGCGACGAGCTGCTGGACGAGCGCAACTTTGAGTATCCGGCGATGAGGAGCGGTCCCAGCGGCGCCTCCCACCACGGCCATCTGTCCAGGGGCGGACGCCTGCTGGAGGATCCGGACTTTGAGCGCGAAGAGGCCCAGATGCGGATGAGCAGCTCACGCTACGGACCCTCGACCAGGATCGACGACCCACGGGATCTGCCGCGTGGCGCCACCGTTGTCGATCGCGATGAATACAGTCCGCACAGAGGTGGTGGGAGTAGTAGGAGAATGCTTAATGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822:FBtr0300536:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0289763, FBpp0301964
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAAACCCGATTTCTCACA
R:
GTAGTGCATGAGGTCACGCTC
Band lengths:
350-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)