DreEX6021221 @ danRer10
Exon Skipping
Gene
ENSDARG00000062174 | cacnb4b
Description
calcium channel, voltage-dependent, beta 4b subunit [Source:ZFIN;Acc:ZDB-GENE-060421-7907]
Coordinates
chr6:13969449-13980545:-
Coord C1 exon
chr6:13980526-13980545
Coord A exon
chr6:13975571-13975651
Coord C2 exon
chr6:13969449-13969507
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCTATGATCTCATCTGCAGACT
3' ss Score
9.48
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCAAGCAGAAACAGAAAGTG
Seq A exon
ACTGAACATGTGGCTCCCTATGATGTTGTGCCTTCCATGAGGCCTGTGGTTCTGGTTGGTCCATCCCTGAAAGGATATGAG
Seq C2 exon
GTCACTGATATGATGCAGAAAGCTCTTTTTGACTTCTTAAAACACCGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062174-'12-19,'12-18,13-19=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.670 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]