DmeEX0003618 @ dm6
Exon Skipping
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11161555-11163098:-
Coord C1 exon
chr2L:11162984-11163098
Coord A exon
chr2L:11162262-11162525
Coord C2 exon
chr2L:11161555-11161834
Length
264 bp
Sequences
Splice sites
3' ss Seq
GGGCACGGTGTGATGAGCAGTAG
3' ss Score
-2.93
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACGTATTGGAAGGCCACCCACCCGGACATTCGAGCAGTGCCGCCCATCGCCCGCCCCCTGCCGCAGGAGGCCTCGCCCTCCGCAGATCCCGCGCGTCTGGGACCGACGCCTCCAG
Seq A exon
TAGATGGCGAGGAGTTTGTCGATGAGCAGGATCCCAGGATGGGCATGTCCGGCGGAGATCGCGAGGGAAGTCGGGAGCGAGACCGCGATAGCAGGGAAAGGGAGAGGGAGCGCGAACGGGAGCGGGATTACTGGGATCGGGAATTCAACAGAGATCGCAGCTCCAAGGATCGCGAAAGGGATCTCGAGTGGGAGCGGGAACGGGCTCGCGAGTGGGAGAGAGAGCGGGAACGAGATTGGGATAGGGAGTTCGATTGGGACCAAG
Seq C2 exon
CATTCACAGCACGTGACATACCCGGTCCCTTTACAACAATGCTATAGATCAAAACGAGTTCAAATCTAAATCAAGCACCACGACCAACACAACTGCGACATCAACAGTACAAAATGCCAAAGACAATTGAACCCGAATTGAAATTGAAATTGAAAACCAAAAGCAAAAACCAAATCAACTGGAACTAGCAAAACTAGCACCCACCGACCGACATCTCCGACGATCTCCACCAGTACAACTCTTTGCCAAGTCAAGACATCCACGAAATCCATGTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822-'18-16,'18-15,19-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.640 C2=0.400
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(0.5=2.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0289392
Main Skipping Isoform:
FBpp0310211
Other Inclusion Isoforms:
FBpp0301962, FBpp0301963
Other Skipping Isoforms:
FBpp0310210
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGACATTCGAGCAGTG
R:
CGGTGGGTGCTAGTTTTGCTA
Band lengths:
301-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)