DreEX6081034 @ danRer10
Exon Skipping
Gene
ENSDARG00000076030 | cacnb3b
Description
calcium channel, voltage-dependent, beta 3b [Source:ZFIN;Acc:ZDB-GENE-090127-1]
Coordinates
chr23:27024372-27028344:+
Coord C1 exon
chr23:27024372-27024424
Coord A exon
chr23:27025380-27025460
Coord C2 exon
chr23:27028286-27028344
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTGTATGTGTGTGTTGCAGACT
3' ss Score
10.09
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GAAAATGGGCAATGCGTCATCTGGGGGCTGGAGATCCACTCCTCCCTCTGCAG
Seq A exon
ACTGAGCATGTTCCTCCCTATGATGTGGTTCCATCCATGAGGCCTGTTGTTCTGGTTGGCCCCTCGTTAAAAGGATATGAG
Seq C2 exon
GTGACTGATATGATGCAGAAAGCCTTGTTTGACTTCCTGAAACACAGGTTTGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076030-'4-7,'4-6,6-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.4=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGGGCAATGCGTCATCTG
R:
CTTCCATCAAACCTGTGTTTCAG
Band lengths:
111-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]