GgaEX1012539 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4112126-4112525:-
Coord C1 exon
chr27:4112506-4112525
Coord A exon
chr27:4112265-4112345
Coord C2 exon
chr27:4112126-4112184
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCCCGGTGCTGCCCCCACAGGCT
3' ss Score
8.69
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CGAAGCAGAAGCAGAAATCG
Seq A exon
GCTGAGCACGTGCCGCCCTACGATGTGGTTCCCTCCATGCGGCCCATCATCCTGGTGGGGCCGTCGTTGAAGGGCTACGAG
Seq C2 exon
GTGACAGATATGATGCAGAAAGCACTGTTTGATTTCTTGAAGCATCGCTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788-'5-9,'5-8,6-9
Average complexity
C1
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
ENSGALT00000043800fB5702
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCAGAAGCAGAAATCG
R:
AGCGATGCTTCAAGAAATCAAACA
Band lengths:
69-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]