BtaEX6088282 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40303898-40305736:+
Coord C1 exon
chr19:40303898-40304052
Coord A exon
chr19:40305138-40305218
Coord C2 exon
chr19:40305678-40305736
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTGCTTCCCCCCAGACA
3' ss Score
10.52
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTAATGAAATGACTAACTTAGCCTTTGAACTAGACCCCCTAGAGTTAGAGGATGAGGAGGCAGAGCTCGGGGAGCAGAGCGGCTCTGCTAAGACTAGTGTTAGCAGTGTTACCACCCCGCCGCCCCACGGCAAGCGCATCCCCTTCTTCAAGAAG
Seq A exon
ACAGAACACGTGCCCCCTTATGACGTGGTACCTTCCATGAGGCCCATTATCCTGGTGGGACCGTCGCTGAAGGGCTATGAG
Seq C2 exon
GTTACAGATATGATGCAGAAAGCTTTATTTGACTTCTTGAAGCATCGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036-'7-14,'7-12,10-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTAGAGGATGAGGAGGCA
R:
TCAAACCGATGCTTCAAGAAGTCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]