RnoEX0016167 @ rn6
Exon Skipping
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85962702-85963490:-
Coord C1 exon
chr10:85963471-85963490
Coord A exon
chr10:85963135-85963215
Coord C2 exon
chr10:85962702-85962760
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTGCTTCCCTCCCAGACA
3' ss Score
10.6
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CCAAACAGAAGCAGAAGTCG
Seq A exon
ACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCATCGCTCAAGGGCTATGAG
Seq C2 exon
GTAACTGACATGATGCAGAAGGCGTTGTTTGACTTCTTGAAGCATCGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518-'22-10,'22-9,23-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACAGAAGCAGAAGTCG
R:
TCAAACCGATGCTTCAAGAAGTCA
Band lengths:
73-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]