DreEX6027588 @ danRer10
Exon Skipping
Gene
ENSDARG00000055565 | cacnb2b
Description
calcium channel, voltage-dependent, beta 2b [Source:ZFIN;Acc:ZDB-GENE-050208-129]
Coordinates
chr2:31516690-31517524:+
Coord C1 exon
chr2:31516690-31516712
Coord A exon
chr2:31516816-31516896
Coord C2 exon
chr2:31517466-31517524
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCACATTTCTTTGATTGCAGGGA
3' ss Score
6.71
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TTCAGCAAGTAAAGAAGAAATCG
Seq A exon
GGAGAGCAATTGGCTGCATATGATGTTGTGCCTTCCATGCGTCCTGTGGTGCTCATGGGGCCTTCACTTAAGGGCTATGAG
Seq C2 exon
GTTACGGACATGATGCAAAAAGCTCTGTTTGATTATTTAAAACACAGATTTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055565-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.2=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]