BtaEX6020985 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021808 | CACNB3
Description
Bos taurus calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA. [Source:RefSeq mRNA;Acc:NM_174509]
Coordinates
chr5:31120057-31120613:-
Coord C1 exon
chr5:31120594-31120613
Coord A exon
chr5:31120316-31120396
Coord C2 exon
chr5:31120057-31120115
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCTCAGGTCAATTCTGCAGGCG
3' ss Score
4.23
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCAAGCAGAAGCAAAAGCAG
Seq A exon
GCGGAACATATTCCTCCATATGACGTGGTACCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGTTATGAG
Seq C2 exon
GTCACAGACATGATGCAGAAGGCGCTCTTCGACTTCCTCAAACATAGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021808-'12-14,'12-13,13-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCAGAAGCAAAAGCAG
R:
AAACCTATGTTTGAGGAAGTCGA
Band lengths:
71-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]