HsaEX0012062 @ hg19
Exon Skipping
Gene
ENSG00000167535 | CACNB3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:HGNC Symbol;Acc:1403]
Coordinates
chr12:49218732-49219275:+
Coord C1 exon
chr12:49218732-49218751
Coord A exon
chr12:49218946-49219026
Coord C2 exon
chr12:49219217-49219275
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCTCATGTCCATTCTGCAGGCG
3' ss Score
8.36
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCAAGCAGAAGCAAAAGCAG
Seq A exon
GCGGAACATGTTCCCCCATATGACGTGGTGCCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGTTATGAG
Seq C2 exon
GTCACAGACATGATGCAGAAGGCTCTCTTCGACTTCCTCAAACACAGATTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167535-'6-7,'6-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.185 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(3.5=85.7)
A:
PF0062516=Guanylate_kin=PU(27.5=93.3),PF130921=CENP-L=PU(2.6=6.7)
C2:
PF0062516=Guanylate_kin=FE(37.3=100),PF130921=CENP-L=FE(48.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCAGAAGCAAAAGCAG
R:
CTGCCATCAAATCTGTGTTTGAGG
Band lengths:
79-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)