MmuEX6056256 @ mm10
Exon Skipping
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98640959-98641458:+
Coord C1 exon
chr15:98640959-98640978
Coord A exon
chr15:98641177-98641257
Coord C2 exon
chr15:98641400-98641458
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTGGCCATTCTGCAGGCG
3' ss Score
6.37
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCAAGCAGAAGCAAAAGCAG
Seq A exon
GCGGAACATGTTCCCCCGTATGATGTGGTGCCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGCTATGAG
Seq C2 exon
GTCACGGACATGATGCAGAAGGCGCTCTTCGACTTCCTTAAACACAGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352-'17-23,'17-21,18-23
Average complexity
S
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.185 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCAGAAGCAAAAGCAG
R:
CTGCCATCAAACCTGTGTTTAAGG
Band lengths:
79-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types