BtaEX0006810 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33158562-33280666:+
Coord C1 exon
chr13:33158562-33158681
Coord A exon
chr13:33257694-33257774
Coord C2 exon
chr13:33280515-33280666
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGCGTCTCCTCTCTCTGCAGACA
3' ss Score
11.05
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTTCGGCAGACTCCTACACCAGCCGTCCATCCGATTCAGATGTTTCTTTGGAGGAAGATCGGGAGGCAGTGCGCAGAGAAGCAGAGCGACAGGCCCAGGCCCAGCTGGAAAAAGCAAAG
Seq A exon
ACAGAGCACACCCCTCCGTATGATGTGGTCCCTTCTATGCGACCTGTGGTCCTGGTGGGCCCCTCTCTGAAGGGGTATGAG
Seq C2 exon
CGGAAGTTCAGAGTGAAATCGAAAGGATTTTTGAACTTGCAAGAACACTGCAACTGGTGGTCCTTGACGCGGACACTATCAATCACCCAGCCCAGCTCAGTAAAACCTCTCTGGCCCCTATTATAGTGTATGTCAAGATTTCTTCTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000_MULTIEX1-5/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.175 C2=0.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCCATCCGATTCAGATG
R:
TGATAGTGTCCGCGTCAAGGA
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development